Difference between revisions of "Main Page"
From Bone Imaging Laboratory
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<center><b><font size="+3">Bone Imaging Laboratory Wiki</font></b> | <center><b><font size="+3">Bone Imaging Laboratory Wiki</font></b> | ||
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+ | == Contents == | ||
+ | {| border="0" align="center" width="98%" valign="top" cellspacing="7" cellpadding="2" | ||
+ | |- | ||
+ | ! width="33%"| | ||
+ | ! | | ||
+ | ! width="33%"| | ||
+ | ! | | ||
+ | ! width="33%"| | ||
+ | |- | ||
+ | |valign="top"| | ||
+ | |||
+ | ===General Lab Topics=== | ||
+ | *[[Research Group Contact Info]] | ||
+ | *[[Conferences]] | ||
+ | *[[Journal Club]] | ||
+ | *[[Subject Recruitment]] | ||
+ | *[[Publications]] | ||
+ | *[[Documents]] | ||
+ | *[[Current Problems]] | ||
+ | *[[Archive]] Obsolete stuff here. | ||
+ | |||
+ | ===Administration=== | ||
+ | *[[Hardware Purchasing]] | ||
+ | *[[Laboratory Equipment List]] | ||
+ | |||
+ | ===Scanco MicroCT=== | ||
+ | ---- | ||
+ | * [[Project Management]] | ||
+ | * [[Evaluation]] | ||
+ | * [[Print outs and visualization]] | ||
+ | |||
+ | ===VMS Workstations=== | ||
+ | ---- | ||
+ | * [[VMS]] | ||
+ | : Basic usage of VMS systems. | ||
+ | * [[Scanco System and Setup]] | ||
+ | * [[Writing Scripts]] | ||
+ | * [[File Transfer]] | ||
+ | * [[Errors and Fixes]] | ||
+ | |||
+ | |bgcolor="#CCCCCC"| | ||
+ | |valign="top"| | ||
+ | |||
+ | ===Visualization=== | ||
+ | ---- | ||
+ | *[[Using ParaView]] | ||
+ | |||
+ | ===Registration and Segmentation=== | ||
+ | ---- | ||
+ | *[[Scanco Image Registration]] | ||
+ | *[[SimilarityRegistration]] | ||
+ | |||
+ | ===Finite Element Modelling=== | ||
+ | ---- | ||
+ | *[[Tutorial on Generating AIMs for FE Analysis]] | ||
+ | : First steps for processing microCT data for FE analysis. | ||
+ | *[[Tutorial on building an FE model with python and vtkski]] | ||
+ | : Read this if you want to build FE models from microCT data, particularly if you have unusual boundary conditions. | ||
+ | *[[Scanco Finite Element Modelling]] | ||
+ | : We typically use our own FE solver, faim. This documentation may however be useful if you want for example to make comparisons with Scanco's FE solver. | ||
+ | |||
+ | ===Statistics=== | ||
+ | *[[JAGS Usage]] | ||
+ | : Analysis of Bayesian models using Markov Chain Monte Carlo | ||
+ | |||
+ | ===Computers=== | ||
+ | ---- | ||
+ | This section covers generic computer-related topics not covered in other sections. | ||
+ | *[[Unix command line basics]] | ||
+ | *[[ssh|Setting up Key Authentication for SSH]] | ||
+ | *[[Lab Server Configuration]] | ||
+ | |bgcolor="#CCCCCC"| | ||
+ | |valign="top"| | ||
− | + | ===Developer=== | |
+ | ---- | ||
+ | ====Lab Software Projects==== | ||
+ | *[[Bone lab libraries]] | ||
+ | : A library of reusable bits for the kinds of things we do in the lab. Built on VTK and ITK and other toolkits. | ||
+ | **[[vtkski development]] | ||
+ | **[[vtkMy development]] | ||
+ | *[[Bone lab applications]] provides a list of lab custom software. | ||
+ | *[[Writing Python scripts that use vtkski]] | ||
+ | *[[ParaView Extensions]] | ||
+ | : How to compile and use the lab ParaView Extensions. | ||
+ | *[[faim development]] | ||
+ | : FAIM is our finite element solver. | ||
+ | *[[SAP development]] | ||
+ | : SAP is a tool for visualizing and manipulating AIMs. | ||
+ | ====Platforms==== | ||
+ | Obtaining, compiling and installing software development tools on various systems. | ||
+ | *[[Development on OS-X]] | ||
+ | *[[Development for Linux]] | ||
+ | *[[Development on Windows]] | ||
+ | *[[Development on VMS]] | ||
− | + | ====Languages and Toolkits==== | |
− | * | + | *[[C++ Development]] |
− | * | + | *[[Creating VTK Classes]] |
+ | *[[ITK Development]] | ||
+ | ====Development Tools==== | ||
+ | *[[Subversion (SVN)]] for accessing the source code of lab software. | ||
− | + | ===Miscellaneous=== | |
+ | ---- | ||
+ | *[[Wireless Network in Morphometrics Lab]] | ||
− | + | |} | |
Revision as of 07:12, 16 September 2010
Contents
General Lab Topics
AdministrationScanco MicroCTVMS Workstations
|
VisualizationRegistration and SegmentationFinite Element Modelling
Statistics
ComputersThis section covers generic computer-related topics not covered in other sections. |
DeveloperLab Software Projects
PlatformsObtaining, compiling and installing software development tools on various systems. Languages and ToolkitsDevelopment Tools
Miscellaneous |
A link back to: Steve Boyd's homepage |
To return to the Lab home page: Biomedical Imaging Metrics Homepage |