Difference between revisions of "Main Page"

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<center><b><font size="+3">Bone Imaging Laboratory Wiki</font></b>
 
<center><b><font size="+3">Bone Imaging Laboratory Wiki</font></b>
  
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<div align="center"><b><u> Wiki Concept</u></b></div>
 
<div align="center"><b><u> Wiki Concept</u></b></div>
  
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<P>The idea of the 'Wiki' site is that any authorized user, in this case a member of the lab, can see and edit any of the pages on this site.  
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<P>The idea of the 'Wiki' site is that any authorized user, in this case a member of the lab, can see and edit any of the pages on this site, as well as create new pages as required.  
 
Also, there is a document section where useful documents can uploaded or downloaded by anyone in the group.</P>  
 
Also, there is a document section where useful documents can uploaded or downloaded by anyone in the group.</P>  
 
<p>The purpose of this is to facilitate
 
<p>The purpose of this is to facilitate
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information exchange within the lab and keep up-to-date HowTo and User Manuals for all lab procedures.</P>
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information exchange within the lab and keep up-to-date How To and User Manuals for all lab procedures.</P>
 
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</center>
 
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== Contents ==
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{| border="0" align="center" width="98%" valign="top" cellspacing="7" cellpadding="2"
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|-
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! |
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! width="33%"|
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! |
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|-
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|valign="top"|
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===General Lab Topics===
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----
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*[[Research Group Contact Info]]
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*[[Conferences]]
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*[[Journal Club]]
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*[[Subject Recruitment]]
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*[[Publications]]
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*[[Documents]]
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*[[Current Problems]]
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*[[Suggested Improvements to BME]]
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===Lab Administration===
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----
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*[[Hardware Purchasing]]
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*[[Laboratory Equipment List]]
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===Scanco MicroCT and VMS Workstations===
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----
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* [http://www.ucalgary.ca/microct/documents/x-ray_how_to Detailed OpenVMS and Scanco MicroCT Instructions]
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* [[Project Management]]
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* [[OpenVMS]]
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: Basic usage of OpenVMS systems.
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* [[Scanco MicroCT Operation]]
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* [[MicroCT Evaluation and Analysis]]
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* [[Writing IPL Scripts]]
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* [[Errors and Fixes]]
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* [[Scanco Medical FAQ]]
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* [[Uploading MRI to Scanco]]
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===Dual-energy X-ray absorptiometry (DXA)===
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----
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* [[Scanning guidelines]]
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===Network Access===
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----
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* [[VPN Setup]]
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|bgcolor="#CCCCCC"|
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|valign="top"|
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===Registration and Segmentation===
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----
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*[[Scanco Image Registration]]
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*[[SimilarityRegistration]]
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*[[skiRegistration]]
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*[[MRI to HR-pQCT Registration with Scanco]]
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===Finite Element Modelling===
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----
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*[[FAIM Finite Element Solver]]
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: This is the lab finite element software.
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*[[Tutorial on Generating AIMs for FE Analysis]]
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: First steps for processing microCT data for FE analysis.
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*[[Scanco Finite Element Modelling]]
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: We typically use our own FE solver, faim.  This documentation may however be useful if you want for example to make comparisons with Scanco's FE solver.
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===Visualization===
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----
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*[[Using ParaView]]
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===Statistics===
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----
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*[[JAGS Usage]]
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: Analysis of Bayesian models using Markov Chain Monte Carlo
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===Computers===
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----
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This section covers generic computer-related topics not covered in other sections.
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*[[Unix command line basics]]
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*[[ssh|SSH tricks]]
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*[[Lab Server Configuration]]
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*[[Computer for STARS software]] STARS is CMG's fluid modelling software.
  
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|bgcolor="#CCCCCC"|
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|valign="top"|
  
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At this time, the major sections of this site are the [[How To's]] pages, for FAQs about various lab processes, and the [[Documents]] section where relevant documents have been uploaded.
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===Developer===
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----
  
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====Lab Software Projects====
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*[[Bone lab libraries]] A library of reusable bits for the kinds of things we do in the lab.  Built on VTK and ITK and other toolkits.
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*[[Bone lab applications]] provides a list of lab custom software.
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*[[SAP development]]
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: SAP is a tool for visualizing and manipulating AIMs.
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*[[IGFA control]]
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: Image guided failure assessment device (aka the cannon) can be controlled from PC via serial port.
  
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====Platforms====
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Obtaining, compiling and installing software development tools on various systems.
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*[[Development on OS-X]]
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*[[Development for Linux]]
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*[[Development on Windows]]
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*[[Development on OpenVMS]]
  
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This is a user-based site, to be edited and improved by all users - feel free to make any modifications you see fit!
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====Languages and Toolkits====
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*See the [[Help:Contents| Help]] section for help using and adding to this site.  The [[Sandbox]] page has been added as a place to practice making changes, adding whatever you feel, to familiarize yourself with the 'Wiki' environment.
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*[[C++ Development]]
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*User accounts have been set up for everyone within the lab.  To see any pages other than this 'Main Page' or to edit any pages, you must login - click the Log-in tab at the top right of page.
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*[[Creating VTK Classes]]
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*[[ITK Development]]
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*[[Matlab Development]]
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*[[Writing plugins for ParaView]]
  
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====Development Tools====
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*[[Subversion (SVN)]] for accessing the source code of lab software.
  
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If you have any new problems or unanswered questions, post them on the [[Current Problems]] page.  Here, group members can post and discuss current problems.  Once problems have been solved, they should be converted into a "How To" format and placed appropriately within the How To section.
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===Miscellaneous===
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----
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*[[Wireless Network in Morphometrics Lab]]
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*[[Archive]] Obsolete stuff here.
  
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And here, we have recently added the [[Publications]] section where all of the lab's publications are posted with the pdf's.
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|}
  
  

Revision as of 07:36, 14 June 2017


Bone Imaging Laboratory Wiki


Wiki Concept

The idea of the 'Wiki' site is that any authorized user, in this case a member of the lab, can see and edit any of the pages on this site, as well as create new pages as required. Also, there is a document section where useful documents can uploaded or downloaded by anyone in the group.

The purpose of this is to facilitate information exchange within the lab and keep up-to-date How To and User Manuals for all lab procedures.

 Smaller bone loss.jpg

Contents

General Lab Topics

Lab Administration

Scanco MicroCT and VMS Workstations

Basic usage of OpenVMS systems.

Dual-energy X-ray absorptiometry (DXA)

Network Access

Registration and Segmentation

Finite Element Modelling

This is the lab finite element software.
First steps for processing microCT data for FE analysis.
We typically use our own FE solver, faim. This documentation may however be useful if you want for example to make comparisons with Scanco's FE solver.

Visualization

Statistics

Analysis of Bayesian models using Markov Chain Monte Carlo

Computers

This section covers generic computer-related topics not covered in other sections.

Developer

Lab Software Projects

SAP is a tool for visualizing and manipulating AIMs.
Image guided failure assessment device (aka the cannon) can be controlled from PC via serial port.

Platforms

Obtaining, compiling and installing software development tools on various systems.

Languages and Toolkits

Development Tools

Miscellaneous


A link back to: Steve Boyd's homepage

To return to the Lab home page: Biomedical Imaging Metrics Homepage
Retrieved from "http://bone.wiki/index.php?title=Main_Page&oldid=5892"