Difference between revisions of "Main Page"

General Lab Topics

• Research Group Contact Info
• Conferences
• Journal Club
• Subject Recruitment
• Publications
• Documents
• Current Problems
• Suggested Improvements to BME

Lab Administration

• Hardware Purchasing
• Laboratory Equipment List

Scanco MicroCT and VMS Workstations

• Detailed OpenVMS and Scanco MicroCT Instructions
• Project Management
• OpenVMS

Basic usage of OpenVMS systems.

• Scanco MicroCT Operation
• MicroCT Evaluation and Analysis
• Writing IPL Scripts
• Errors and Fixes
• Scanco Medical FAQ
• Uploading MRI to Scanco

Dual-energy X-ray absorptiometry (DXA)

• Scanning guidelines

Network Access

• VPN Setup

Registration and Segmentation

• Scanco Image Registration
• SimilarityRegistration
• skiRegistration
• MRI to HR-pQCT Registration with Scanco

Finite Element Modelling

• FAIM Finite Element Solver

This is the lab finite element software.

• Tutorial on Generating AIMs for FE Analysis

First steps for processing microCT data for FE analysis.

• Scanco Finite Element Modelling

We typically use our own FE solver, faim. This documentation may however be useful if you want for example to make comparisons with Scanco's FE solver.

Visualization

• Using ParaView

Statistics

• JAGS Usage

Analysis of Bayesian models using Markov Chain Monte Carlo

Computers

This section covers generic computer-related topics not covered in other sections.

• Unix command line basics
• SSH tricks
• Lab Server Configuration
• Boyd Drive Access
• Computer for STARS software STARS is CMG's fluid modelling software.

Developer

Lab Software Projects

• Bone lab libraries A library of reusable bits for the kinds of things we do in the lab. Built on VTK and ITK and other toolkits.
• Bone lab applications provides a list of lab custom software.
• SAP development

SAP is a tool for visualizing and manipulating AIMs.

• IGFA control

Image guided failure assessment device (aka the cannon) can be controlled from PC via serial port.

Platforms

Obtaining, compiling and installing software development tools on various systems.

• Development on OS-X
• Development for Linux
• Development on Windows
• Development on OpenVMS

Languages and Toolkits

• C++ Development
• Creating VTK Classes
• ITK Development
• Matlab Development
• Writing plugins for ParaView

Development Tools

• Subversion (SVN) for accessing the source code of lab software.

Miscellaneous

• Wireless Network in Morphometrics Lab
• Archive Obsolete stuff here.

A link back to: Steve Boyd's homepage