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| | *[[Wireless Network in Morphometrics Lab]] | | *[[Wireless Network in Morphometrics Lab]] |
| | *[[Archive]] Obsolete stuff here. | | *[[Archive]] Obsolete stuff here. |
| − | *[[Research Group Contact Info]]
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| − | |}
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| | | | |
| − |
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| − | ----
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| − | <table align="left" width="85%">
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| − | <tr>
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| − | <td align="left" valign="middle" >
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| − | A link back to: [http://www.enme.ucalgary.ca/~skboyd/ Steve Boyd's homepage]
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| − | </td>
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| − | <td align="left" valign="middle"> To return to the Lab home page: [http://www.enme.ucalgary.ca/research/microct/ Biomedical Imaging Metrics Homepage]</td>
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| − | </tr></table>
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| − |
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| − | ===Lab Administration===
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| − | ----
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| − | *[[Hardware Purchasing]]
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| − | *[[Laboratory Equipment List]]
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| − |
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| − | ===Scanco MicroCT and VMS Workstations===
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| − | ----
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| − | * [http://www.ucalgary.ca/microct/documents/x-ray_how_to Detailed OpenVMS and Scanco MicroCT Instructions]
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| − | * [[Project Management]]
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| − | * [[OpenVMS]]
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| − | : Basic usage of OpenVMS systems.
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| − | * [[Scanco MicroCT Operation]]
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| − | * [[MicroCT Evaluation and Analysis]]
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| − | * [[Writing IPL Scripts]]
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| − | * [[Errors and Fixes]]
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| − | * [[Scanco Medical FAQ]]
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| − | * [[Uploading MRI to Scanco]]
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| − | * [[Uploading Xradia *.bin to Scanco]]
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| − | * [[Remote access to MicroCT system (working from home)]]
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| − |
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| − | ===Dual-energy X-ray absorptiometry (DXA)===
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| − | ----
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| − | * [[Scanning guidelines]]
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| − |
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| − | ===Network Access===
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| − | ----
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| − | * [[VPN Setup]]
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| − |
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| − |
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| − |
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| − | |bgcolor="#CCCCCC"|
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| − | |valign="top"|
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| − |
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| − | ===Registration and Segmentation===
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| − | ----
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| − | *[[Scanco Image Registration]]
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| − | *[[SimilarityRegistration]]
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| − | *[[skiRegistration]]
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| − | *[[MRI to HR-pQCT Registration with Scanco]]
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| − |
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| − | ===Finite Element Modelling===
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| − | ----
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| − | *[[FAIM Finite Element Solver]]
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| − | : This is the lab finite element software.
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| − | *[[Tutorial on Generating AIMs for FE Analysis]]
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| − | : First steps for processing microCT data for FE analysis.
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| − | *[[Scanco Finite Element Modelling]]
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| − | : We typically use our own FE solver, faim. This documentation may however be useful if you want for example to make comparisons with Scanco's FE solver.
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| − |
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| − | ===Visualization===
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| − | ----
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| − | *[[Using ParaView]]
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| − |
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| − | ===Statistics===
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| − | ----
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| − | *[[JAGS Usage]]
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| − | : Analysis of Bayesian models using Markov Chain Monte Carlo
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| − |
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| − | ===Computers===
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| − | ----
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| − | This section covers generic computer-related topics not covered in other sections.
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| − | *[[Unix command line basics]]
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| − | *[[ssh|SSH tricks]]
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| − | *[[Lab Server Configuration]]
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| − | *[[Boyd Drive Setup]]
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| − | *[[Computer for STARS software]] STARS is CMG's fluid modelling software.
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| − |
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| − | |bgcolor="#CCCCCC"|
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| − | |valign="top"|
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| − |
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| − | ===Developer===
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| − | ----
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| − |
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| − | ====Lab Software Projects====
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| − | ----
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| − | *[[Bone lab libraries]] A library of reusable bits for the kinds of things we do in the lab. Built on VTK and ITK and other toolkits.
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| − | *[[Bone lab applications]] provides a list of lab custom software.
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| − | *[[SAP development]]
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| − | : SAP is a tool for visualizing and manipulating AIMs.
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| − | *[[IGFA control]]
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| − | : Image guided failure assessment device (aka the cannon) can be controlled from PC via serial port.
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| − |
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| − | ====Platforms====
| |
| − | ----
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| − | Obtaining, compiling and installing software development tools on various systems.
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| − | *[[Development on OS-X]]
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| − | *[[Development for Linux]]
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| − | *[[Development on Windows]]
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| − | *[[Development on OpenVMS]]
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| − |
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| − | ====Languages and Toolkits====
| |
| − | ----
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| − | *[[C++ Development]]
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| − | *[[Creating VTK Classes]]
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| − | *[[ITK Development]]
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| − | *[[Matlab Development]]
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| − | *[[Writing plugins for ParaView]]
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| − |
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| − | ====Development Tools====
| |
| − | ----
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| − | *[[Subversion (SVN)]] for accessing the source code of lab software.
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| − |
| |
| − | ===Miscellaneous===
| |
| − | ----
| |
| − | *[[Wireless Network in Morphometrics Lab]]
| |
| − | *[[Archive]] Obsolete stuff here.
| |
| − | *[[Research Group Contact Info]]
| |
| | |} | | |} |
| | | | |
