Difference between revisions of "Main Page"

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===General Lab Topics===
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===[[Scanco User Instructions]]===
 
----
 
----
*[[Research Group Contact Info]]
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* [http://bone.wiki/index.php?title=Scanco_User_Instructions#OpenVMS_Basics OpenVMS Basics]
*[[Conferences]]
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* [http://bone.wiki/index.php?title=Scanco_User_Instructions#Scanning Scanning]
*[[Journal Club]]
 
*[[Subject Recruitment]]
 
*[[Publications]]
 
*[[Documents]]
 
*[[Current Problems]]
 
*[[Suggested Improvements to BME]]
 
 
 
===Lab Administration===
 
----
 
*[[Hardware Purchasing]]
 
*[[Laboratory Equipment List]]
 
 
 
===Scanco MicroCT and VMS Workstations===
 
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* [http://www.ucalgary.ca/microct/documents/x-ray_how_to Detailed OpenVMS and Scanco MicroCT Instructions]
 
 
* [[Project Management]]
 
* [[Project Management]]
* [[OpenVMS]]
 
: Basic usage of OpenVMS systems.
 
 
* [[Scanco MicroCT Operation]]
 
* [[Scanco MicroCT Operation]]
 
* [[MicroCT Evaluation and Analysis]]
 
* [[MicroCT Evaluation and Analysis]]
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* [[Scanco Medical FAQ]]
 
* [[Scanco Medical FAQ]]
 
* [[Uploading MRI to Scanco]]
 
* [[Uploading MRI to Scanco]]
 
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* [[Uploading Xradia *.bin to Scanco]]
===Dual-energy X-ray absorptiometry (DXA)===
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* [[Remote Access (working from home)]]
----
 
* [[Scanning guidelines]]
 
 
 
===Network Access===
 
----
 
* [[VPN Setup]]
 
 
 
  
  
 
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 +
 +
===[[Scanco Administration]]===
 +
----
 +
* [http://bone.wiki/index.php?title=Scanco_Administration#OpenVMS OpenVMS]
 +
* [http://bone.wiki/index.php?title=OpenVMS#Scanning_FAQ Scanning FAQ]
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* [[Reconstruction]]
 +
* [[Process, Jobs and Printing]]
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* [[Data Management]]
 +
* [[Remote Access]]
 +
* [[Calibration]]
 +
* [[Dose]]
 +
* [[Software FAQ]]
 +
* [[Hardware FAQ]]
  
 
===Registration and Segmentation===
 
===Registration and Segmentation===
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*[[Scanco Finite Element Modelling]]
 
*[[Scanco Finite Element Modelling]]
 
: We typically use our own FE solver, faim.  This documentation may however be useful if you want for example to make comparisons with Scanco's FE solver.
 
: We typically use our own FE solver, faim.  This documentation may however be useful if you want for example to make comparisons with Scanco's FE solver.
 
===Visualization===
 
----
 
*[[Using ParaView]]
 
 
===Statistics===
 
----
 
*[[JAGS Usage]]
 
: Analysis of Bayesian models using Markov Chain Monte Carlo
 
  
 
===Computers===
 
===Computers===
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*[[ssh|SSH tricks]]
 
*[[ssh|SSH tricks]]
 
*[[Lab Server Configuration]]
 
*[[Lab Server Configuration]]
*[[Boyd Drive Access]]
 
*[[Computer for STARS software]] STARS is CMG's fluid modelling software.
 
  
 
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----
 
----
  
====Lab Software Projects====
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====Software and Plugins====
 
----
 
----
 
*[[Bone lab libraries]] A library of reusable bits for the kinds of things we do in the lab.  Built on VTK and ITK and other toolkits.
 
*[[Bone lab libraries]] A library of reusable bits for the kinds of things we do in the lab.  Built on VTK and ITK and other toolkits.
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*[[IGFA control]]
 
*[[IGFA control]]
 
: Image guided failure assessment device (aka the cannon) can be controlled from PC via serial port.
 
: Image guided failure assessment device (aka the cannon) can be controlled from PC via serial port.
 +
*[[JAGS Statistics]]
 +
: Analysis of Bayesian models using Markov Chain Monte Carlo
 +
*[[ParaView]]
 +
*[[Subversion (SVN)]] for accessing the source code of lab software.
  
 
====Platforms====
 
====Platforms====
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*[[Matlab Development]]
 
*[[Matlab Development]]
 
*[[Writing plugins for ParaView]]
 
*[[Writing plugins for ParaView]]
 
====Development Tools====
 
----
 
*[[Subversion (SVN)]] for accessing the source code of lab software.
 
  
 
===Miscellaneous===
 
===Miscellaneous===

Revision as of 18:24, 28 September 2020


Bone Imaging Laboratory Wiki


Wiki Concept

The idea of the 'Wiki' site is that any authorized user, in this case a member of the lab, can see and edit any of the pages on this site, as well as create new pages as required. Also, there is a document section where useful documents can uploaded or downloaded by anyone in the group.

The purpose of this is to facilitate information exchange within the lab and keep up-to-date How To and User Manuals for all lab procedures.

Smaller bone loss.jpg

Contents

Scanco User Instructions



Scanco Administration


Registration and Segmentation


Finite Element Modelling


This is the lab finite element software.
First steps for processing microCT data for FE analysis.
We typically use our own FE solver, faim. This documentation may however be useful if you want for example to make comparisons with Scanco's FE solver.

Computers


This section covers generic computer-related topics not covered in other sections.

Developer


Software and Plugins


SAP is a tool for visualizing and manipulating AIMs.
Image guided failure assessment device (aka the cannon) can be controlled from PC via serial port.
Analysis of Bayesian models using Markov Chain Monte Carlo

Platforms


Obtaining, compiling and installing software development tools on various systems.

Languages and Toolkits


Miscellaneous




A link back to: Steve Boyd's homepage

To return to the Lab home page: Biomedical Imaging Metrics Homepage