Difference between revisions of "Main Page"

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===[[Scanco User Instructions]]===
 
===[[Scanco User Instructions]]===
 
----
 
----
−
*[[Scanco_User_Instructions#OpenVMS_Basics| OpenVMS Basics]]
+
*[[Scanco_User_Instructions#OpenVMS_Basics| '''OpenVMS Basics''']]
−
*[[Scanco_User_Instructions#Micro-Computed_Tomography_.28.C2.B5CT.29_Basics| Micro-CT Basics]]
+
**[[Scanco_User_Instructions#OpenVMS_Beginner.27s_Reference| Beginner's Reference]]
−
*[[Scanco_User_Instructions#Scanning| Scanning]]
+
**[[Scanco_User_Instructions#Session_Manager| Session Manager]]
−
*[[Scanco_User_Instructions#Evaluation| Evaluation]]
+
**[[Scanco_User_Instructions#DEC_Terminal_and_Digital_Command_Language_.28DCL.29| DEC Terminal and DCL]]
−
*[[Scanco_User_Instructions#Results| Results]]
+
**[[Scanco_User_Instructions#DCL_Programming_Guide| DCL Programming Guide]]
−
*[[Scanco_User_Instructions#Backup_and_Deletion| Backup and Deletion]]
+
**[[Scanco_User_Instructions#List_of_basic_commands| List of basic commands]]
−
*[[Scanco_User_Instructions#Export_and_Import| Export and Import]]
+
 
 +
*[[Scanco_User_Instructions#Micro-Computed_Tomography_.28.C2.B5CT.29_Basics| '''Micro-CT Basics''']]
 +
**[[title=Scanco_User_Instructions#User_Tutorials| User Tutorials]]
 +
**[[Scanco_User_Instructions#Micro-CT_Image_Basics| µCT Image Basics]]
 +
**[[Scanco_User_Instructions#Image_Data_Type| Image Data Type]]
 +
**[[Scanco_User_Instructions#Scanco_Medical_Micro-CT_Software| Scanco Medical µCT Software]]
 +
 
 +
*[[Scanco_User_Instructions#Bone_Morphometry_and_Densitometry| '''Bone Morphometry and Densitometry''']]
 +
**[[Scanco_User_Instructions#Suggested_readings| Suggested readings]]
 +
**[[Scanco_User_Instructions#Model-Independent_.28Direct.29_Structural_Measurements| Model-Independent (Direct) Structural Measurements]]
 +
**[[Scanco_User_Instructions#Densitometric_Measurements| Densitometric Measurements]]
 +
 
 +
*[[Scanco_User_Instructions#Scanning| '''Scanning''']]
 +
**[[Scanco_User_Instructions#Sample_Name_Convention| Sample Name Convention]]
 +
**[[Scanco_User_Instructions#Register_Samples_for_Scanning| Register Samples for Scanning]]
 +
**[[Scanco_User_Instructions#Log_Sheets| Log Sheets]]
 +
**[[Scanco_User_Instructions#Patient_Casts_and_Sample_Holders| Patient Casts and Sample Holders]]
 +
**[[Scanco_User_Instructions#Scan_Parameters_.28Controlfiles.29| Scan Parameters (Controlfiles)]]
 +
**[[Scanco_User_Instructions#Perform_a_Scan| Perform a Scan]]
 +
**[[Scanco_User_Instructions#Image_Artifacts| Image Artifacts]]
 +
 
 +
*[[Scanco_User_Instructions#Evaluation| '''Evaluation''']]
 +
**[[Scanco_User_Instructions#Evaluate_a_Scan| Evaluate a Scan]]
 +
**[[Scanco_User_Instructions#Draw_Contours| Draw Contours]]
 +
**[[Scanco_User_Instructions#Evaluation_Scripts| Evaluation Scripts]]
 +
**[[Scanco_User_Instructions#Image_Processing_Language_.28IPL.29_Scripting| IPL Scripting]]
 +
 
 +
*[[Scanco_User_Instructions#Results| '''Results''']]
 +
**[[Scanco_User_Instructions#Extract_Results| Extract Results]]
 +
**[[Scanco_User_Instructions#Generate_Report| Generate Report]]
 +
**[[Scanco_User_Instructions#Result_Analysis_Script| Result Analysis Script]]
 +
**[[Scanco_User_Instructions#Images_and_Animations| Images and Animations]]
 +
 
 +
*[[Scanco_User_Instructions#Backup_and_Deletion| '''Backup and Deletion''']]
 +
**[[Scanco_User_Instructions#Trainee.E2.80.99s_Data_Responsibility| Trainee’s Data Responsibility]]
 +
 
 +
*[[Scanco_User_Instructions#Export_and_Import| '''Export and Import''']]
 
**[[Scanco_User_Instructions#Get_Your_Files| Get Your Files]]
 
**[[Scanco_User_Instructions#Get_Your_Files| Get Your Files]]
−
**[[Scanco_User_Instructions#Import_MRI_to_Scanco_System|Import MRI to Scanco System]]
+
**[[Scanco_User_Instructions#Import_MRI_to_Scanco_System| Import MRI Images]]
−
**[[Scanco_User_Instructions#Import_Xradia_.2A.bin_to_Scanco_System|Import Xradia *.bin to Scanco System]]
+
**[[Scanco_User_Instructions#Import_Xradia_.2A.bin_to_Scanco_System|Import Xradia *.bin]]
−
*[[Scanco_User_Instructions#Remote_Access| Remote Access]]
 
−
 
 
  
 +
*[[Scanco_User_Instructions#Remote_Access| '''Remote Access''']]
 +
**[[Scanco_User_Instructions#VPN_Setup| VPN Setup]]
 +
**[[Scanco_User_Instructions#Setup_for_MAC.2FLinux| Setup for MAC/Linux]]
 +
**[[Scanco_User_Instructions#Setup_for_Windows| Setup for Windows]]
 +
**[[Scanco_User_Instructions#Remote_Access_FAQ| Remote Access FAQ]]
  
  
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===[[Scanco Administration]]===
 
===[[Scanco Administration]]===
 
----
 
----
−
* [[Scanco_Administration#OpenVMS| OpenVMS]]
+
* [[Scanco_Administration#OpenVMS| '''OpenVMS''']]
−
* [[Scanco_Administration#Scanning_FAQ| Scanning FAQ]]
+
**[[Scanco_Administration#OpenVMS_References| OpenVMS References]]
−
* [[Scanco_Administration#Calibration_and_Quality_Control_.28QC.29 | Calibration and Quality Control (QC)]]
+
 
−
* [[Reconstruction]]
+
* [[Scanco_Administration#Scanning_FAQ| '''Scanning FAQ''']]
−
* [[Process, Jobs and Printing]]
+
**[[Scanco_Administration#Scanner_User_Manual| Scanner User Manual]]
−
* [[Scanco_Administration#Data_Management | Data Management]]
+
**[[Scanco_Administration#Scanco.27s_FAQ| Scanco's FAQ]]
−
* [[Remote Access]]
+
**[[Scanco_Administration#Reconstruction| Reconstruction]]
−
* [[Dose]]
+
 
−
* [[Software FAQ]]
+
* [[Scanco_Administration#Calibration_and_Quality_Control_.28QC.29 | '''Calibration and Quality Control (QC)''']]
−
* [[Hardware FAQ]]
+
**[[Scanco_Administration#System_Updates| System Updates]]
 +
**[[Scanco_Administration#Calibration_and_Conversion| Calibration and Conversion]]
 +
**[[Scanco_Administration#Calibration_FAQ| Calibration FAQ]]
 +
**[[Scanco_Administration#QC_Scans| QC Scans]]
 +
**[[Scanco_Administration#QC_FAQ| QC FAQ]]
 +
 
 +
*[[Scanco_Administration#Data_Management | '''Data Management''']]
 +
**[[Scanco_Administration#Lab.E2.80.99s_Data_Responsibility| Lab’s Data Responsibility]]
 +
**[[Scanco_Administration#Tape| Tape]]
 +
**[[Scanco_Administration#Archive_and_Backup_Procedures| Archive/Backup Procedures]]
 +
**[[Scanco_Administration#Using_Scripts_for_Backup_and_Restore| Using Scripts for Backup/Restore]]
 +
 
 +
*[[Scanco_Administration#Process.2C_Jobs_and_Printing| '''Process, Jobs and Printing''']]
 +
*[[Remote Access]]
 +
*[[Scanco_Administration#Dose| '''Dose''']]
 +
 
  
 
===Registration and Segmentation===
 
===Registration and Segmentation===

Revision as of 14:09, 14 December 2020


Bone Imaging Laboratory Wiki


Wiki Concept

The idea of the 'Wiki' site is that any authorized user, in this case a member of the lab, can see and edit any of the pages on this site, as well as create new pages as required. Also, there is a document section where useful documents can uploaded or downloaded by anyone in the group.

The purpose of this is to facilitate information exchange within the lab and keep up-to-date How To and User Manuals for all lab procedures.

 Smaller bone loss.jpg

Contents

Scanco User Instructions

Scanco Administration


Registration and Segmentation

Finite Element Modelling

This is the lab finite element software.
First steps for processing microCT data for FE analysis.
We typically use our own FE solver, faim. This documentation may however be useful if you want for example to make comparisons with Scanco's FE solver.

Computers

This section covers generic computer-related topics not covered in other sections.

Developer

Software Plugins and Codes

SAP is a tool for visualizing and manipulating AIMs.
Image guided failure assessment device (aka the cannon) can be controlled from PC via serial port.
Analysis of Bayesian models using Markov Chain Monte Carlo

Platforms

Obtaining, compiling and installing software development tools on various systems.

Languages and Toolkits

Miscellaneous


A link back to: Steve Boyd's homepage

To return to the Lab home page: Biomedical Imaging Metrics Homepage
Retrieved from "http://bone.wiki/index.php?title=Main_Page&oldid=6694"