Difference between revisions of "Main Page"

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__NOTOC__
 
__NOTOC__
 
 
<center><b><font size="+3">Bone Imaging Laboratory Wiki</font></b>
 
<center><b><font size="+3">Bone Imaging Laboratory Wiki</font></b>
  
  
 
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<table width="100%" border="0">
<table width="97%" border="0">
 
 
<tr>  
 
<tr>  
<td width="450" align="left" valign="middle" bgcolor="#ccff66">
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<td width="15%" align="center" valign="middle" bgcolor="#ccff66">
 
<div align="center"><b><u> Wiki Concept</u></b></div>
 
<div align="center"><b><u> Wiki Concept</u></b></div>
  
<P>The idea of the 'Wiki' site is that any authorized user, in this case a member of the lab, can see and edit any of the pages on this site, as well as create new pages as required.  
+
<P> The idea of the 'Wiki' site is that any authorized user, in this case a member of the lab, can see and edit any of the pages on this site, as well as create new pages as required. </P>
Also, there is a document section where useful documents can uploaded or downloaded by anyone in the group.</P>  
+
 
<p>The purpose of this is to facilitate
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<br>
information exchange within the lab and keep up-to-date How To and User Manuals for all lab procedures.</P>
+
 
 +
<div align="center"><b><u> The Purpose</u></b></div>
 +
 
 +
<p>It's to facilitate information exchange within the lab and keep up-to-date How To and User Manuals for lab's technical procedures and FAQ.</P>
 +
 
 +
</td>
 +
 
 +
<td bgcolor="#ccff66">      [[File:BonelabScanners.JPG|center|750px]]</td>
 +
 
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<td width="25%" align="left" valign="middle" bgcolor="#ccff66">
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<div align="center"><b><u> Read me</u></b></div>
 +
 
 +
<p>
 +
#Use '''Ctr+F''' to search within any page.
 +
#Never include login credentials especially password anywhere.
 +
#It's all users' responsibility to keep the info precise, updated, abundant, and useful, through editing/addition/deletion as needed by clicking [edit] on the top-right corner of a page or item. This includes combining same/similar topics besides an item whenever appropriate.
 +
#Add a redirect line after each new item for consistency:
 +
#:[[Image:Redirect.jpg|15px]] [[#top|''Return to Contents'']] or [[Main_Page|''Return to Main Page'']]
 +
#Click '''Help''' on navigation list on the left penal for detailed editing instructions.
 +
#Contact Ying if you are not sure where to put a new item or could not find an item.
 +
</P>
 
</td>
 
</td>
  
<td bgcolor="#ccff05">[[Image:Smaller_bone_loss.jpg]]</td>
 
 
</tr>
 
</tr>
 
</table>
 
</table>
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</center>
 
</center>
  
== Contents ==
 
 
{| border="0" align="center" width="98%" valign="top" cellspacing="7" cellpadding="2"
 
{| border="0" align="center" width="98%" valign="top" cellspacing="7" cellpadding="2"
 
|-
 
|-
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|valign="top"|
 
|valign="top"|
  
===[[Scanco User Instructions]]===
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==[[Scanco User Instructions]]==
----
 
 
[[Scanco_User_Instructions#OpenVMS_Basics| '''OpenVMS Basics''']]
 
[[Scanco_User_Instructions#OpenVMS_Basics| '''OpenVMS Basics''']]
 
*[[Scanco_User_Instructions#OpenVMS_Beginner.27s_Reference| Beginner's Reference]]
 
*[[Scanco_User_Instructions#OpenVMS_Beginner.27s_Reference| Beginner's Reference]]
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*[[Scanco_User_Instructions#Setup_for_Windows| Setup for Windows]]
 
*[[Scanco_User_Instructions#Setup_for_Windows| Setup for Windows]]
 
*[[Scanco_User_Instructions#Remote_Access_FAQ| Remote Access FAQ]]
 
*[[Scanco_User_Instructions#Remote_Access_FAQ| Remote Access FAQ]]
 
===[[Books and References]]===
 
----
 
[[Books_and_References#Imaging|'''Imaging''']]
 
*[[Books_and_References#Essential_Physics_of_Medical_Imaging| Essential Physics of Medical Imaging]]
 
 
[[Books_and_References#Bone|'''Bone''']]
 
*[[Books_and_References#Books_on_Bone| Books on Bone]]
 
*[[Books_and_References#Bone_Morphometry_and_Densitometry| Bone Morphometry and Densitometry]]
 
 
 
 
  
 
|bgcolor="#CCCCCC"|
 
|bgcolor="#CCCCCC"|
 
|valign="top"|
 
|valign="top"|
  
===[[Scanco Administration]]===
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==[[Scanco Administration]]==
----
 
 
[[Scanco_Administration#OpenVMS| '''OpenVMS''']]
 
[[Scanco_Administration#OpenVMS| '''OpenVMS''']]
 
*[[Scanco_Administration#OpenVMS_References| OpenVMS References]]
 
*[[Scanco_Administration#OpenVMS_References| OpenVMS References]]
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*[[Scanco_Administration#Dose_Calculations| Dose Calculations]]
 
*[[Scanco_Administration#Dose_Calculations| Dose Calculations]]
 
*[[Scanco_Administration#Optimize_Scan_for_Low_Dose| Optimize Scan for Low Dose]]
 
*[[Scanco_Administration#Optimize_Scan_for_Low_Dose| Optimize Scan for Low Dose]]
 
  
 
|bgcolor="#CCCCCC"|
 
|bgcolor="#CCCCCC"|
 
|valign="top"|
 
|valign="top"|
===[[Xradia Instructions]]===
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----
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==[[Xradia Instructions]]==
 
*[[Xradia_Instructions#User_Tutorials| User Tutorials]]
 
*[[Xradia_Instructions#User_Tutorials| User Tutorials]]
 
*[[Xradia_Instructions#Scanning| Scanning]]
 
*[[Xradia_Instructions#Scanning| Scanning]]
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*[[Xradia_Instructions#Image_Tours| Image Tours]]
 
*[[Xradia_Instructions#Image_Tours| Image Tours]]
  
===[[Image Registration]]===
+
==[[Books and References]]==
----
+
[[Books_and_References#Imaging|'''Imaging''']]
 +
*[[Books_and_References#Essential_Physics_of_Medical_Imaging| Essential Physics of Medical Imaging]]
 +
 
 +
[[Books_and_References#Bone|'''Bone''']]
 +
*[[Books_and_References#Books_on_Bone| Books on Bone]]
 +
*[[Books_and_References#Bone_Morphometry_and_Densitometry| Bone Morphometry and Densitometry]]
 +
 
 +
[[Books_and_References#Student_Reports|'''Student Reports''']]
 +
 
 +
==[[Image Registration]]==
 
[[Image_Registration#Scanco_Image_Registration|'''Scanco Image Registration''']]
 
[[Image_Registration#Scanco_Image_Registration|'''Scanco Image Registration''']]
 
*[[Image_Registration#Image_Transformation|Image Transformation]]
 
*[[Image_Registration#Image_Transformation|Image Transformation]]
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*[[Image_Registration#ITK_Rigid_registration_for_HR-pQCT| ITK Rigid registration for HR-pQCT]]
 
*[[Image_Registration#ITK_Rigid_registration_for_HR-pQCT| ITK Rigid registration for HR-pQCT]]
  
===[[Finite Element Modelling]]===
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==[[Finite Element Modelling]]==
----
 
 
*[[Finite_Element_Modelling#Scanco_Finite_Element_Modelling| Scanco Finite Element Modelling]]
 
*[[Finite_Element_Modelling#Scanco_Finite_Element_Modelling| Scanco Finite Element Modelling]]
 
*[[Finite_Element_Modelling#FAIM_Finite_Element_Solver| FAIM Finite Element Solver]]
 
*[[Finite_Element_Modelling#FAIM_Finite_Element_Solver| FAIM Finite Element Solver]]
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*[[Finite_Element_Modelling#Prepare_AIMs_for_FE_Analysis| Prepare AIMs for FE Analysis]]
 
*[[Finite_Element_Modelling#Prepare_AIMs_for_FE_Analysis| Prepare AIMs for FE Analysis]]
  
===[[Software Plugins and Codes]]===
+
==[[Software Plugins and Codes]]==
 
----
 
----
[[Software_Plugins_and_Codes#ImageJ| '''ImageJ''']]
+
*[[Software_Plugins_and_Codes#ImageJ| '''ImageJ''']]
*[[Software_Plugins_and_Codes#Plugin_to_read_AIM_ISQ_RSQ_files| Plugin to read AIM ISQ RSQ]]
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*[[Software_Plugins_and_Codes#Amira| '''Amira''']]
*[[Software_Plugins_and_Codes#Generate_TIFF_from_AIM| Generate TIFF from AIM]]
+
*[[Software_Plugins_and_Codes#R|'''R''']]  
 
+
*[[Software_Plugins_and_Codes#ParaView| '''ParaView''']]
[[Software_Plugins_and_Codes#Amira| '''Amira''']]
 
*[[Software_Plugins_and_Codes#Script_to_read_AIM_files| Script to read AIM]]
 
 
 
[[Software_Plugins_and_Codes#R|'''R''']]  
 
*[[Software_Plugins_and_Codes#JAGS_Statistics| JAGS Statistics]]
 
 
 
[[Software_Plugins_and_Codes#ParaView| '''ParaView''']]
 
*[[Software_Plugins_and_Codes#Writing_Plugins_for_Paraview| Writing Plugins for Paraview ]]
 
  
===Languages and Toolkits===
+
==Languages and Toolkits==
----
 
 
*[[C++|'''C++''']]
 
*[[C++|'''C++''']]
 
*[[VTK|'''VTK''']]
 
*[[VTK|'''VTK''']]
 
*[[ITK|'''ITK''']]
 
*[[ITK|'''ITK''']]
  
===Miscellaneous===
+
==Miscellaneous==
----
+
*[[Software_Development_Platforms| '''Software Development Platforms''']]
*[[Archive]] Obsolete stuff here.
+
*[[Archive|'''Archive''']]  
*[[Software_Development_Platforms| Software Development Platforms]]
+
 
 
|}
 
|}
 
  
 
----
 
----
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<tr>
 
<tr>
 
<td align="left" valign="middle" >
 
<td align="left" valign="middle" >
A link back to: [http://www.enme.ucalgary.ca/~skboyd/ Steve Boyd's homepage]
+
To: [https://www.ucalgary.ca/labs/bonelab/team/steven-boyd '''Steve Boyd's homepage''']
 
</td>
 
</td>
<td align="left" valign="middle"> To return to the Lab home page: [http://www.enme.ucalgary.ca/research/microct/ Biomedical Imaging Metrics Homepage]</td>
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<td align="left" valign="middle"> To: [https://www.ucalgary.ca/labs/bonelab/home '''Bone Imaging Lab homepage''']</td>
 
</tr></table>
 
</tr></table>

Latest revision as of 19:30, 5 May 2021

Bone Imaging Laboratory Wiki


Wiki Concept

The idea of the 'Wiki' site is that any authorized user, in this case a member of the lab, can see and edit any of the pages on this site, as well as create new pages as required.


The Purpose

It's to facilitate information exchange within the lab and keep up-to-date How To and User Manuals for lab's technical procedures and FAQ.

BonelabScanners.JPG
Read me

  1. Use Ctr+F to search within any page.
  2. Never include login credentials especially password anywhere.
  3. It's all users' responsibility to keep the info precise, updated, abundant, and useful, through editing/addition/deletion as needed by clicking [edit] on the top-right corner of a page or item. This includes combining same/similar topics besides an item whenever appropriate.
  4. Add a redirect line after each new item for consistency:
    Redirect.jpg Return to Contents or Return to Main Page
  5. Click Help on navigation list on the left penal for detailed editing instructions.
  6. Contact Ying if you are not sure where to put a new item or could not find an item.

Scanco User Instructions

OpenVMS Basics

Micro-CT Basics

Scanning

Evaluation

Results

Data Management

Import and Export

Remote Access

Scanco Administration

OpenVMS

Calibration and QC

Scanning

Evaluation

Results

Data Management

Process, Printer and System

Remote Access

Dose

Xradia Instructions

Books and References

Imaging

Bone

Student Reports

Image Registration

Scanco Image Registration

SimilarityRegistration

skiRegistration

Finite Element Modelling

Software Plugins and Codes


Languages and Toolkits

Miscellaneous


To: Steve Boyd's homepage

To: Bone Imaging Lab homepage