Editing Scanco Administration (section)

====Start 3D evaluation from terminal for microCTs====

[[Image:Bones2.jpg|20px]] <b>Warning:</b>Do not change <code>uct_evaulation_v4.com</code> and <code>ipl_fixed_batch_v4.com</code> in .eval, but only work on your own file (i.e., eval_steve).

First, an explanation of how the normal evaluation runs by hitting the 'Start 3d' button.
<pre>$ scanco_submit_command ue:uct_evaluation_v4.com/para=(xxx,yyy,zzz,…)</pre>
There are 8 parameters:
*P1: number of print outs of our results sheet
*P2: the ISQ filename
*P3-5: start x (pos x), y, z
*P6-8: dim x, y, z
The parameters p3-p8 come from the white bounding box. The problem is that when you start from the terminal you do not have these. This problem can be overcome by using the <code>isq_to_aim_gobjbox.exe</code> and then give the relevant parameters. You can 
<code>$ run um: isq_to_aim_gobjbox.exe </code>
to see what it's asking for.
By using gobjbox you do not need p3-p8. Therefore you can start the evaluation by giving:
<pre>$ scanco_submit_command ue:uct_evaluation_special_josh.com –
/para=(1,dk0:[microct.data.0000275.0000245]c0000332.ISQ)</pre>
*You can make <code>uct_evaluation_special_josh.com</code> such that there is no need for P1 (change p2 to p1 in the script, etc).
*Alternatively to using the gobjbox you could use the normal isq_to_aim, but hard code the dim and pos.
*Then call whatever IPL files you want to call. Look into <code>fixed_batch_v4</code> to see how we turn on the database always on the first line of every IPL part, and how we calculate parameters.


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