Editing Scanco Administration (section)

=== Create 3D image for XtremeCT II patient report manually ===

Here we create the 3D image used in XtremeCT II patient reports manually. You'll need to set an appropriate preset for the visualization first (i.e. based on skeletal site):
<pre>
$ SETUP_FILE = "UU:3D_PRESET_UPAT_RL_1.DAT"
$ SETUP_FILE = "UU:3D_PRESET_UPAT_RR_1.DAT"
$ SETUP_FILE = "UU:3D_PRESET_UPAT_TL_1.DAT"
$ SETUP_FILE = "UU:3D_PRESET_UPAT_TR_1.DAT"
</pre> 

Then we define which segmented aim file to use:
<pre>
$ EVAL_SEGAIM = "DISK2:[XTREMECT2.DATA.00002891.00015311]D0013333_SEG.AIM"
</pre>

Now define the name of the output file using the standardized format that has patient and measurement number:

<pre>
$ PRINT_FILE = "IDISK1:[XTREMECT2.DATA.UPAT_VIEWS]PAT00002870_MEAS00015315_3D_1.TIF"
</pre>

Then run UCT_3D_BATCH (as opposed to UCT_3D which does not take the setup file in the command line):

<pre>
$ UCT_3D_BATCH 'SETUP_FILE' 'EVAL_SEGAIM' 'PRINT_FILE'
</pre>

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