Editing Scanco Administration (section)

====Update QC1 contours====
If the QC contours don't line up on the phantom, then the contours need to be updated on the system.  Normally this should not happen unless the phantom has become loose - if this is the case, re-fix it.

1. Login as user system.  Do not use the <code>$ set host 0 </code> command since you will not be able to open windows for program.<br>
2. Run the login script for the user that does the QC scans so that Scanco logicals point to that scan database.
          $ @adisk1:[microct]login.com     on the XtremeCT cluster
          $ @adisk1:[microct]login.com     on the vivaCT cluster
          $ @disk1:[microct]login.com       on the µCT100 cluster

3. Run the evaluation program.
          $ uct_evaluation
4. Load the most recent QC scan and locate the contours. File-->Load Gobj... Filter:  <code>uctd:*.GOBJ</code>. Locate the contours for the phantom: <code> UCT_PHANTOM_KP_HA_XXXX_Y.GOBJ  </code> where XXXX corresponds with the scanner ID (XtremeCT 3309, vivaCT 5019, µCT35 2339, µCT100 6002) and Y corresponds with the rod number (1-5 and results mean1 - mean5. <br>

5. Adjust the contours to centre on the rods.
    Load a contour.
    Move the contour on the first slice to be centred on the rod.
    Copy the contour.
    Delete the contours on slices 2 to the end.
    Paste the contour on the last slice.
    Morph between the two contours.
    Save the contours.  They should be saved to (A)DISK0:[000000.MICROCT_COMMON.DATABASE].
6. Perform a new QC scan as the standard (i.e., microct) user.  Check that the contours line up for the evaluation.  Evaluate and check the results.


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