Difference between revisions of "Main Page"
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<div align="center"><b><u> Wiki Concept</u></b></div> | <div align="center"><b><u> Wiki Concept</u></b></div> | ||
− | <P>The idea of the 'Wiki' site is that any authorized user, in this case a member of the lab, can see and edit any of the pages on this site. | + | <P>The idea of the 'Wiki' site is that any authorized user, in this case a member of the lab, can see and edit any of the pages on this site, as well as create new pages as required. |
Also, there is a document section where useful documents can uploaded or downloaded by anyone in the group.</P> | Also, there is a document section where useful documents can uploaded or downloaded by anyone in the group.</P> | ||
<p>The purpose of this is to facilitate | <p>The purpose of this is to facilitate | ||
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===General Lab Topics=== | ===General Lab Topics=== | ||
+ | ---- | ||
*[[Research Group Contact Info]] | *[[Research Group Contact Info]] | ||
*[[Conferences]] | *[[Conferences]] | ||
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*[[Documents]] | *[[Documents]] | ||
*[[Current Problems]] | *[[Current Problems]] | ||
− | *[[ | + | *[[Suggested Improvements to BME]] |
− | ===Administration=== | + | ===Lab Administration=== |
+ | ---- | ||
*[[Hardware Purchasing]] | *[[Hardware Purchasing]] | ||
*[[Laboratory Equipment List]] | *[[Laboratory Equipment List]] | ||
− | ===Scanco MicroCT=== | + | ===Scanco MicroCT and VMS Workstations=== |
---- | ---- | ||
+ | * [http://www.ucalgary.ca/microct/documents/x-ray_how_to Detailed OpenVMS and Scanco MicroCT Instructions] | ||
+ | * [[Project Management]] | ||
+ | * [[OpenVMS]] | ||
+ | : Basic usage of OpenVMS systems. | ||
+ | * [[Scanco MicroCT Operation]] | ||
+ | * [[MicroCT Evaluation and Analysis]] | ||
+ | * [[Writing IPL Scripts]] | ||
+ | * [[Errors and Fixes]] | ||
* [[Scanco Medical FAQ]] | * [[Scanco Medical FAQ]] | ||
− | * [[ | + | * [[Uploading MRI to Scanco]] |
− | + | ||
− | * [[ | + | ===Dual-energy X-ray absorptiometry (DXA)=== |
+ | ---- | ||
+ | * [[Scanning guidelines]] | ||
− | === | + | ===Network Access=== |
---- | ---- | ||
− | * [[ | + | * [[VPN Setup]] |
− | + | ||
− | + | ||
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− | |||
− | |||
|bgcolor="#CCCCCC"| | |bgcolor="#CCCCCC"| | ||
|valign="top"| | |valign="top"| | ||
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===Registration and Segmentation=== | ===Registration and Segmentation=== | ||
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*[[Scanco Image Registration]] | *[[Scanco Image Registration]] | ||
*[[SimilarityRegistration]] | *[[SimilarityRegistration]] | ||
+ | *[[skiRegistration]] | ||
+ | *[[MRI to HR-pQCT Registration with Scanco]] | ||
===Finite Element Modelling=== | ===Finite Element Modelling=== | ||
---- | ---- | ||
+ | *[[FAIM Finite Element Solver]] | ||
+ | : This is the lab finite element software. | ||
*[[Tutorial on Generating AIMs for FE Analysis]] | *[[Tutorial on Generating AIMs for FE Analysis]] | ||
: First steps for processing microCT data for FE analysis. | : First steps for processing microCT data for FE analysis. | ||
− | |||
− | |||
*[[Scanco Finite Element Modelling]] | *[[Scanco Finite Element Modelling]] | ||
: We typically use our own FE solver, faim. This documentation may however be useful if you want for example to make comparisons with Scanco's FE solver. | : We typically use our own FE solver, faim. This documentation may however be useful if you want for example to make comparisons with Scanco's FE solver. | ||
+ | |||
+ | ===Visualization=== | ||
+ | ---- | ||
+ | *[[Using ParaView]] | ||
===Statistics=== | ===Statistics=== | ||
+ | ---- | ||
*[[JAGS Usage]] | *[[JAGS Usage]] | ||
: Analysis of Bayesian models using Markov Chain Monte Carlo | : Analysis of Bayesian models using Markov Chain Monte Carlo | ||
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This section covers generic computer-related topics not covered in other sections. | This section covers generic computer-related topics not covered in other sections. | ||
*[[Unix command line basics]] | *[[Unix command line basics]] | ||
− | *[[ssh| | + | *[[ssh|SSH tricks]] |
*[[Lab Server Configuration]] | *[[Lab Server Configuration]] | ||
+ | *[[Computer for STARS software]] STARS is CMG's fluid modelling software. | ||
|bgcolor="#CCCCCC"| | |bgcolor="#CCCCCC"| | ||
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====Lab Software Projects==== | ====Lab Software Projects==== | ||
− | *[[Bone lab libraries]] | + | *[[Bone lab libraries]] A library of reusable bits for the kinds of things we do in the lab. Built on VTK and ITK and other toolkits. |
− | |||
− | |||
− | |||
*[[Bone lab applications]] provides a list of lab custom software. | *[[Bone lab applications]] provides a list of lab custom software. | ||
− | |||
− | |||
− | |||
− | |||
− | |||
*[[SAP development]] | *[[SAP development]] | ||
: SAP is a tool for visualizing and manipulating AIMs. | : SAP is a tool for visualizing and manipulating AIMs. | ||
+ | *[[IGFA control]] | ||
+ | : Image guided failure assessment device (aka the cannon) can be controlled from PC via serial port. | ||
====Platforms==== | ====Platforms==== | ||
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*[[Development for Linux]] | *[[Development for Linux]] | ||
*[[Development on Windows]] | *[[Development on Windows]] | ||
− | *[[Development on | + | *[[Development on OpenVMS]] |
====Languages and Toolkits==== | ====Languages and Toolkits==== | ||
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*[[Creating VTK Classes]] | *[[Creating VTK Classes]] | ||
*[[ITK Development]] | *[[ITK Development]] | ||
+ | *[[Matlab Development]] | ||
+ | *[[Writing plugins for ParaView]] | ||
====Development Tools==== | ====Development Tools==== | ||
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---- | ---- | ||
*[[Wireless Network in Morphometrics Lab]] | *[[Wireless Network in Morphometrics Lab]] | ||
+ | *[[Archive]] Obsolete stuff here. | ||
|} | |} |
Revision as of 07:36, 14 June 2017
Contents
General Lab Topics
Lab AdministrationScanco MicroCT and VMS Workstations
Dual-energy X-ray absorptiometry (DXA)Network Access
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Registration and Segmentation
Finite Element Modelling
VisualizationStatistics
ComputersThis section covers generic computer-related topics not covered in other sections.
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DeveloperLab Software Projects
PlatformsObtaining, compiling and installing software development tools on various systems. Languages and Toolkits
Development Tools
Miscellaneous
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A link back to: Steve Boyd's homepage |
To return to the Lab home page: Biomedical Imaging Metrics Homepage |