Editing Scanco User Instructions (section)

=Data Management=
==Trainee’s Data Responsibility==
#Perform '''Contouring and Data Analysis''' on Data Disk ideally 1-2 months after scanning.
#After finished onsite analysis, [[Scanco_User_Instructions#Move_data_from_Data_Disk_to_Project_Disk|'''use Scripts''']] to '''Copy and Rename''' image data (no RSQ, no ISQ, only AIM, SEG.AIM, GOBJ, COM, LOG, PDF, PS ect) to your specific project folder on Project Disk.
#After finished copying all your image data to Project Disk, '''Notify''' lab personal to delete your data on Data Disk by providing a [[Media:Data_Scans_to_delete_template.xlsx|'''Data Scans to Delete Template''']].
#'''Notify''' lab personal to backup your project folder on Project Disk to Winston server on a monthly basis. 
#*Only the two most recent backups (A or B version) are kept for each project on Winston:
#:Backup version "_A" for odd months (Jan, Mar, May, Jul, Sep, Nov), e.g. YZHU_A_OTHER_2017-01-12.SAV
#:Backup version "_B" for even months (Feb, Apr, Jun, Aug, Oct, Dec), e.g. YZHU_B_OTHER_2020-04-08.SAV
#When a project is finished, '''Notify''' lab personal to archive your project to HOG server.
#When a trainee is about leaving, '''Notify''' Steve and lab personal to determine either to backup or to archive your project. 

[[File:BoneLabDataManagement.JPG|800px]]


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==Move data from Data Disk to Project Disk==
This is generally done after onsite analysis (i.e. autocontour, cortical porosity, FE etc.) is done. Examples of this can be found in DISK3:[MICROCT.PROJECTS.GRACE.COM]<br>
1. Go to the specific project's .COM directory, for example:  
<pre>
$ cd DISK3:[MICROCT.PROJECTS.GRACE.COM]
</pre>
2. Create a script that will move all IMA (i.e. .AIM, .GOBJ, _SEG.AIM, _CORTEX.AIM, _LHTH_DTN.AIM) to the .MODELS directory for the project. You will use the rename_to_models.com script to generate this script. To move Grace data for example, with a measurement range of 2684 to 2685, you would use: 
 $ @com:rename_to_models.com <b>meas#1:meas#2 DESTINATION DIR</b>
 $ @com:rename_to_models.com 2684:2685 DISK3:[MICROCT.PROJECTS.GRACE.MODELS]

3.This will create a file named RENAME_ALL.COM to the project's COM directory. You will now have to open the RENAME_ALL.COM file and add site + other details into the script. Following the same example as above, it should look like this: 
 $ eve RENAME_ALL.COM     ! to open the file using a text editor 
 $ COPY DISK2:[MICROCT.DATA.00000700.00002684]C0002040.AIM -
    DISK3:[MICROCT.PROJECTS.GRACE.MODELS]GRACE_020_<b>00MTH_RR</b>.AIM
 $! DELETE/CONFIRM DISK2:[MICROCT.DATA.00000700.00002684]C0002040.AIM;1
 $ COPY DISK2:[MICROCT.DATA.00000700.00002685]C0002041.AIM -
    DISK3:[MICROCT.PROJECTS.GRACE.MODELS]GRACE_020_<b>00MTH_RL</b>.AIM
 $! DELETE/CONFIRM DISK2:[MICROCT.DATA.00000700.00002685]C0002041.AIM;1
4. You also need to copy the rest of the standard patient image files (i.e. .AIM, .GOBJ, _SEG.AIM, _CORTEX.AIM, _LHTH_DTN.AIM) which is easily done by copying the above lines and replacing .AIM with the respective files.

[[Image:Bones2.jpg|20px]] <b>Warning:</b> Always use the same account consistently to create all files and subfolders within their Project folder, otherwise you way miss data when doing Project Backup or Archive!

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