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Bone Imaging Laboratory Wiki

Wiki Concept The idea of the 'Wiki' site is that any authorized user, in this case a member of the lab, can see and edit any of the pages on this site, as well as create new pages as required. Also, there is a document section where useful documents can uploaded or downloaded by anyone in the group. The purpose of this is to facilitate information exchange within the lab and keep up-to-date How To and User Manuals for all lab procedures.

Contents

General Lab Topics Research Group Contact Info Conferences Journal Club Subject Recruitment Publications Documents Current Problems Suggested Improvements to BME Lab Administration Hardware Purchasing Laboratory Equipment List Scanco MicroCT and VMS Workstations Project Management OpenVMS Basic usage of OpenVMS systems. Scanco MicroCT Operation MicroCT Evaluation and Analysis Writing IPL Scripts Errors and Fixes Scanco Medical FAQ		Visualization Using ParaView Registration and Segmentation Scanco Image Registration SimilarityRegistration Finite Element Modelling Tutorial on Generating AIMs for FE Analysis First steps for processing microCT data for FE analysis. Tutorial on building an FE model with python and vtkski Read this if you want to build FE models from microCT data, particularly if you have unusual boundary conditions. Scanco Finite Element Modelling We typically use our own FE solver, faim. This documentation may however be useful if you want for example to make comparisons with Scanco's FE solver. Statistics JAGS Usage Analysis of Bayesian models using Markov Chain Monte Carlo Computers This section covers generic computer-related topics not covered in other sections. Unix command line basics SSH tricks Lab Server Configuration Computer for STARS software STARS is CMG's fluid modelling software.		Developer Lab Software Projects Bone lab libraries A library of reusable bits for the kinds of things we do in the lab. Built on VTK and ITK and other toolkits. vtkski development vtkMy development Bone lab applications provides a list of lab custom software. Writing Python scripts that use vtkski ParaView Extensions How to compile and use the lab ParaView Extensions. faim development FAIM is our finite element solver. SAP development SAP is a tool for visualizing and manipulating AIMs. IGFA control Image guided failure assessment device (aka the cannon) can be controlled from PC via serial port. Platforms Obtaining, compiling and installing software development tools on various systems. Development on OS-X Development for Linux Development on Windows Development on OpenVMS Languages and Toolkits C++ Development Creating VTK Classes ITK Development Matlab Development Development Tools Subversion (SVN) for accessing the source code of lab software. Miscellaneous Wireless Network in Morphometrics Lab Archive Obsolete stuff here.

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