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| Line 161: |
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| *[[Wireless Network in Morphometrics Lab]] | | *[[Wireless Network in Morphometrics Lab]] |
| *[[Archive]] Obsolete stuff here. | | *[[Archive]] Obsolete stuff here. |
| *[[Research Group Contact Info]]
| |
| |}
| |
|
| |
|
|
| |
| ----
| |
| <table align="left" width="85%">
| |
| <tr>
| |
| <td align="left" valign="middle" >
| |
| A link back to: [http://www.enme.ucalgary.ca/~skboyd/ Steve Boyd's homepage]
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| </td>
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| <td align="left" valign="middle"> To return to the Lab home page: [http://www.enme.ucalgary.ca/research/microct/ Biomedical Imaging Metrics Homepage]</td>
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| </tr></table>
| |
|
| |
| ===Lab Administration===
| |
| ----
| |
| *[[Hardware Purchasing]]
| |
| *[[Laboratory Equipment List]]
| |
|
| |
| ===Scanco MicroCT and VMS Workstations===
| |
| ----
| |
| * [http://www.ucalgary.ca/microct/documents/x-ray_how_to Detailed OpenVMS and Scanco MicroCT Instructions]
| |
| * [[Project Management]]
| |
| * [[OpenVMS]]
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| : Basic usage of OpenVMS systems.
| |
| * [[Scanco MicroCT Operation]]
| |
| * [[MicroCT Evaluation and Analysis]]
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| * [[Writing IPL Scripts]]
| |
| * [[Errors and Fixes]]
| |
| * [[Scanco Medical FAQ]]
| |
| * [[Uploading MRI to Scanco]]
| |
| * [[Uploading Xradia *.bin to Scanco]]
| |
| * [[Remote access to MicroCT system (working from home)]]
| |
|
| |
| ===Dual-energy X-ray absorptiometry (DXA)===
| |
| ----
| |
| * [[Scanning guidelines]]
| |
|
| |
| ===Network Access===
| |
| ----
| |
| * [[VPN Setup]]
| |
|
| |
|
| |
|
| |
| |bgcolor="#CCCCCC"|
| |
| |valign="top"|
| |
|
| |
| ===Registration and Segmentation===
| |
| ----
| |
| *[[Scanco Image Registration]]
| |
| *[[SimilarityRegistration]]
| |
| *[[skiRegistration]]
| |
| *[[MRI to HR-pQCT Registration with Scanco]]
| |
|
| |
| ===Finite Element Modelling===
| |
| ----
| |
| *[[FAIM Finite Element Solver]]
| |
| : This is the lab finite element software.
| |
| *[[Tutorial on Generating AIMs for FE Analysis]]
| |
| : First steps for processing microCT data for FE analysis.
| |
| *[[Scanco Finite Element Modelling]]
| |
| : We typically use our own FE solver, faim. This documentation may however be useful if you want for example to make comparisons with Scanco's FE solver.
| |
|
| |
| ===Visualization===
| |
| ----
| |
| *[[Using ParaView]]
| |
|
| |
| ===Statistics===
| |
| ----
| |
| *[[JAGS Usage]]
| |
| : Analysis of Bayesian models using Markov Chain Monte Carlo
| |
|
| |
| ===Computers===
| |
| ----
| |
| This section covers generic computer-related topics not covered in other sections.
| |
| *[[Unix command line basics]]
| |
| *[[ssh|SSH tricks]]
| |
| *[[Lab Server Configuration]]
| |
| *[[Boyd Drive Setup]]
| |
| *[[Computer for STARS software]] STARS is CMG's fluid modelling software.
| |
|
| |
| |bgcolor="#CCCCCC"|
| |
| |valign="top"|
| |
|
| |
| ===Developer===
| |
| ----
| |
|
| |
| ====Lab Software Projects====
| |
| ----
| |
| *[[Bone lab libraries]] A library of reusable bits for the kinds of things we do in the lab. Built on VTK and ITK and other toolkits.
| |
| *[[Bone lab applications]] provides a list of lab custom software.
| |
| *[[SAP development]]
| |
| : SAP is a tool for visualizing and manipulating AIMs.
| |
| *[[IGFA control]]
| |
| : Image guided failure assessment device (aka the cannon) can be controlled from PC via serial port.
| |
|
| |
| ====Platforms====
| |
| ----
| |
| Obtaining, compiling and installing software development tools on various systems.
| |
| *[[Development on OS-X]]
| |
| *[[Development for Linux]]
| |
| *[[Development on Windows]]
| |
| *[[Development on OpenVMS]]
| |
|
| |
| ====Languages and Toolkits====
| |
| ----
| |
| *[[C++ Development]]
| |
| *[[Creating VTK Classes]]
| |
| *[[ITK Development]]
| |
| *[[Matlab Development]]
| |
| *[[Writing plugins for ParaView]]
| |
|
| |
| ====Development Tools====
| |
| ----
| |
| *[[Subversion (SVN)]] for accessing the source code of lab software.
| |
|
| |
| ===Miscellaneous===
| |
| ----
| |
| *[[Wireless Network in Morphometrics Lab]]
| |
| *[[Archive]] Obsolete stuff here.
| |
| *[[Research Group Contact Info]]
| |
| |} | | |} |
|
| |
|
